PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0087s0163.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 233aa    MW: 25981.9 Da    PI: 6.273
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0087s0163.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-191868155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         s+++GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  Kaladp0087s0163.1.p 18 SKFTGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 68
                         79********.7*********32...35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.50E-331876No hitNo description
PfamPF008473.0E-131868IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-201877IPR016177DNA-binding domain
PROSITE profilePS5103219.9411976IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-281976IPR001471AP2/ERF domain
SMARTSM003803.5E-361982IPR001471AP2/ERF domain
PRINTSPR003673.3E-82031IPR001471AP2/ERF domain
PRINTSPR003673.3E-84258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MNKSVCNSVG NFKGKSRSKF TGVRQRPSGR WVAEIKDTTQ KIRMWLGTFE TAEEAARAYD  60
EAACLLRGSN TRTNFATRVS SNSPLALRIQ NLLKKRNGTK VEQQSSTVQS EALSPTCSIN  120
TSLFSKNVTC TSSDMAGDAQ FHDHTCRPDL TDASETTWEL NGFLYTQESL DTPKTELDCT  180
RNSEFSEFER MKVERQISAS LYALNGVQEY MDTVNDVTDA FWDLPPLCSL SH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-161381268ATERF1
3gcc_A3e-161381268ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899372.13e-83PREDICTED: ethylene-responsive transcription factor RAP2-11-like
SwissprotQ6J9S16e-54RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBLD7TI776e-81D7TI77_VITVI; Putative uncharacterized protein
STRINGVIT_08s0007g07250.t012e-80(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.19e-43related to AP2 11